†: not have an acknowledgement for COE
- Kobayashi, Y and Yamamura, N. (in press) Evolution of signal emission by uninfested plants to help nearby infested relatives. Evolutionary Ecology.
- Yamamura, N., N. Fujita, M. Hayashi, Y. Nakamura, and A. Yamauchi. (in press) Optimal phenology of annual plants under grazing pressure. Journal of Theoretical Biology.
- Nakazawa, T., N. Ishida, M. Kato, and N. Yamamura. (in press) Larger body size with higher predation rate. Ecology of Freshwater Fish.
- Kobayashi, Y. and N.Yamamura. 2007. How to compute the effective size of spatiotemporally structured populations using separation of time scales., Theoretical population biology 71: 174-181.
- Yamamura, N. (in press) Conditions for plants to help herbivores and thereby benefit from predators through apparent competition. Ecology.
- Nakazawa, T. and N. Yamamura. 2007. Breeding migration and population stability. Population Ecology 49: 101-113.
- Kobayashi,Y., N. Yamamura and M. W. Sabelis 2006. Evolution of talking plants in a tritrophic context: Conditions for uninfested plants to attract predators prior to herbivoreattack. J. Theor. Biol. 243: 361-374.
- Nakazawa, T. and N. Yamamura. 2006. Community structure and stability analysis for intraguild interactions among host, parasitoid, and predator. Population Ecology. 48: 139-149.
- Satake, A., T. Ohgushi, S. Urano, and K. Uchimura. 2006. Modelling population dynamics of a tea pest with temperature dependent development: predicting emergence timing and potential damage. Ecological Research.21:107-116.
- Telschow, A., A. Engelstter, N. Yamamura, P. Hammerstein and P. D. Hurst. 2006. Asymmetric gene flow and constraints on adaptation caused by sex ratio. J. Evolutionary Biology.19: 869-878.
- Yamamura, N. 2006. Relationships between biodiversity and ecosystem functioning across different scales. Ecological Research 21:1-2.
- Yamauchi A. 2006. Formulation of competition between sexual and selfing forms. Evolution. 60: 1952-1953.
- Yamauchi, A. and N. Yamamura. 2006. Persistence conditions of symmetric social hybridogenesis in haplo-diploid Hymenoptera. J. Theor. Biol. 240:24-31.
- Yamauchi, A. 2005. Rate of gene transfer from mitochondria to nucleus: Effects of probability and intensity of intracellular competition. Genetics. 171:1387-1396.
- Miki. T. and N. Yamamura. 2005. Effects of asynchronous fluctuations in DOC supply and bacterial growth on biodegradation efficiency. Ecological Modelling. 183: 281-299.
- Miki, T., N. Yamamura. 2005. Intraguild predation reduces bacterial species richness and loosens the viral loop in aquatic systems: ‘kill the killer of the winner’ hypothesis. Aquatic Microbial Ecology. 40: 1-12.
- Miki, T. and N. Yamamura. 2005. Theoretical model for interactions between particle-associated and free-living bacteria to predict the functional composition and succession of the bacterial community. Aquatic Microbial Ecology 39: 35-46.
- Telschow, A., N. Yamamura, and J.H. Werren. 2005. Bidirectional cytoplasmic incompatibility and the stable coexistence of two Wolbachia strains in parapatric host populations. J. Theor. Biol. 235: 265-274.
- Telschow, A., P. Hammerstein, J.H. Werren. 2005. The effect of Wolbachia versus genetic incompatibilities on reinforcement and speciation. Evolution. 59(8) :1607-1619.
- Yamauchi, A. and Yamamura, N. 2005. Effects of defense evolution and optimal diet choice on population dynamics of a one predator-two prey system. Ecology 86:2513-2524.
- Yamauchi, A. and Yamamura, N. 2004. Herbivory promotes plant production and reproduction in nutrient-poor conditions: Effects of plant adaptive phenology. Am. Nat. 163: 138-153.
- Yamauchi, A., A, Hosokawa, H. Nagata, and M. Shimoda. 2004. Triploid bridge and role of parthenogenesis in the evolution of autopolyploidy. Am. Nat. 164: 101-112.
- Yamamura, N., M. Higashi, N. Behera, and J. Y. Wakano. 2004. Evolution of mutualism through spatial effects. J. Theor. Biol. 226: 421-428.
- Kondoh, M. 2003. Response to comment on "foraging adaptation and the relationship between food-web complexity and stability". Science 301: 918c.
- Yamauchi, A. 2003. Factors affecting binary sex evolution with respect to avoidance of vertical transmission of deleterious intracellular parasites. J. Theor. Biol. 222: 505-515.