†: not have an acknowledgement for COE
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A.S.Pradeep Ram, T. Nagata, Y. Tomaru and K. Nagasaki (in presss) Tungstate compounds as an alternative to uranyl acetate forenumerating viral infected prokaryote cells in aquatic systems Aquatic Microbial Ecology
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Takeyama, T., Noboru, O. and Yanagisawa, Y. 2007. Filial cannibalism as a conditional strategy in males of paternal mouthbrooding fish. Evolutionary Ecology, 21, 109-119.
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Fukuda, H., Sohrin, R. Nagata, T. and Koike, I. 2007. Size distribution andbiomass of nanoflagellates in meso- and bathypelagic layers of the subarcticPacific. Aquatic Microbial Ecology. 46: 203-207.
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Yonekura, R., K. Kawamura, and K. Uchii (in press) A peculiar relationship between genetic diversity and adaptability in invasive exotic species: bluegill sunfish as a model species. Ecological Research.
- Uchii, K., N. Okuda, R. Yonekura, Z. Karube, K. Matsui, & Z. Kawabata (in press) Trophic polymorphism in bluegill sunfish (Lepomis macrochirus) introduced into Lake Biwa: Evidence from stable isotope analysis. Liminology.
- Takeyama, T., N. Okuda & Y. Yanagisawa (in press) Filial cannibalism as a conditional strategy in males of a paternal mouthbrooding fish. Evolutionary Ecology.
- Honjo, M., K. Matsui, M. Ueki, R. Nakamura, J. A. Fuhrman and Z. Kawabata. 2006. Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond. Journal of Plankton Research. 28: 407-412.
- Kim, C., Y. Nishimura and T. Nagata. 2006. Role of dissolved organic matter in hypolimnetic mineralization of carbon and nitrogen in a large, monomictic lake. Limnology and Oceanography. 51: 70-78．
- Mabuchi, K., N. Okuda and M. Nishida. 2006. Molecular phylogeny and stripe pattern evolution in cardinalfish genus Apogon. Molecular Phylogenetics and Evolution. 38: 90-99. †
- Uchii, K., K. Matsui, R. Yonekura, K. Tani, T. Kenzaka, M. Nasu and Z. Kawabata. 2006. Genetic and physiological characterization of the intestinal bacterial microbiota of bluegill (Lepomis macrochirus) with three different feeding habits. Microbial Ecology. 51 (3): 277 - 284.
- Nakano, T., Tayasu, I., Wada, E., Igeta, A., Hyodo, F. and Miura, Y. 2005. Sulfur and strontium isotope geochemistry of tributary rivers of Lake Biwa: implications for human impact on the decadal change of lake water quality. Science of the Total Environment 345: 1-12.†
- Nishimura, Y., C. Kim, and T. Nagata. 2005. Vertical and seasonal variations of bacterioplankton subgroups with different nucleic acid contents: Possible regulation by phosphorus. Applied and Environmental Microbiology 71:5828-5836.
- Okuda, N., H. Hamaoka and K. Omori. 2005. Life history and ecology of glowbelly, Acropoma japonicum, in Uwa Sea, Japan. Fisheries Science, 71(5): 1042-1048. †
- Yokokawa, T. and T. Nagata. 2005. Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments. Applied and Environmental Microbiology 71: 6799-6807.
- Hirasawa, R., M. Urabe, and M. Yuma. 2004. Relationship between intermediate host taxon and infection by nematodes of the genus Rhabdochona. Parasitology International. 53: 89-97.
- Ueki, M., K. Matsui, K. Choi, and Z. Kawabata. 2004. The enhancement of conjugal plasmid pBHR1 transfer between bacteria in the presence of extracellular metabolic products produced by Microcystis aeruginosa. FEMS Microbiol. Ecol. 51: 1-8.
- Yokokawa, T., T. Nagata, M. T. Cottrell, and D. L. Kirchman. 2004. Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol. Oceanogr. 49: 1620-1629.
- Hirasawa, R. and M. Yuma. 2003. Ephemera strigata imagoes are the likely source of a parasitic nematode infection of fish. Folia Parasitologica 50: 313-314.